Mycoscience
Online ISSN : 1618-2545
Print ISSN : 1340-3540
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New species of Hymenagaricus and Xanthagaricus (Agaricaceae), from Maharashtra, India
Prashant B. PatilSharda VaidyaSatish MauryaNitinkumar P. Patil
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2025 Volume 66 Issue 2 Pages 120-133

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Abstract

Based on morphological and molecular evidence, two new species, namely Hymenagaricus indicus and Xanthagaricus nigrosquamosus, are described from tropical region of Maharashtra, India. Hymenagaricus indicus is morphologically circumscribed by its small basidiomata, covered with brown plate-like squamules at the centre along with small, numerous squamules scattered towards margin, pileal squamules composed of globose to subglobose elements, and yellowish brown, ellipsoid to ovoid-ellipsoid, smooth basidiospores. Xanthagaricus nigrosquamosus is characterised by its yellowish pileus covered with black squamules, epithelial pileipellis, and broadly ellipsoid to ovoid-ellipsoid, rugulose-rough, basidiospores. Molecular phylogenetic analyses using rDNA ITS1-5.8S-ITS2, and partial 28S rDNA sequences also confirmed that they are distinct from their closest taxa.

1. Introduction

The paleotropical genus Hymenagaricus Heinem. was erected by Heinemann in the family Agaricaceae and designated by H. hymenopileus Heinem. as the type species (Heinemann, 1981). Heinemann and Little Flower (1984) divided the genus Hymenagaricus into two subgenera, i.e., Hymenagaricus and Xanthagaricus (Heinem.) Little Flower, Hosag, & T.K. Abraham. Later on, Little Flower et al., (1997) elevated the subgenus Xanthagaricus as an independent genus typified by X. flavidorufus (Berk. & Broome) Little Flower, Hosag. & T.K. Abraham. Phylogenetic studies also supported their independent generic status (Al-Kharousi et al., 2022; Hosen et al., 2017, 2018; Hussain et al., 2018). Small to medium-sized basidiomata, squamulose pileus surface, pileipellis made up of mainly hymeniform cells at centre, becoming sub-hymeniform, epitheloid to trichoid towards the margin. Basidiospores usually smooth, ellipsoid, brownish tinged, and the absence of pleurocystidia and clamp connections are the defining features of the genus Hymenagaricus (Heinemann & Little Flower, 1984; Little Flower et al., 1997; Reid & Eicker, 1995), whereas the genus Xanthagaricus is characterised by its small to rarely medium-sized basidiomata, squamulose pileus surface, pileipellis composed of subhymeniform or globose to subglobose cells, yellowish brown or bluish tinged, smooth or mostly ornamented basidiospores, and the absence of pleurocystidia and clamp connections (Heinemann & Little flower, 1984; Hosen et al., 2017; Little Flower et al., 1997).

At present, there are twenty one species of Hymenagaricus (Crous et al., 2023; Heinemann, 1981, 1985; Heinemann & Little Flower, 1984; Hussain et al., 2024; Kumla et al., 2021, 2023; Mwanga & Tibuhwa, 2014; Pegler, 1977, 1986; Reid & Eicker, 1995, 1998, 1999; Syed et al., 2023; Yang et al., 2024) and thirty nine species of Xanthagaricus are described from the Paleotropical regions of the world (Al-Kharousi et al., 2022; Fatima & Khalid, 2023; Ge et al., 2008; Haqnawaz et al., 2023; Heinemann & Little Flower, 1984; Hosen et al., 2017, 2018; Hussain et al., 2018; Javeed et al., 2024; Kumla et al., 2018; Little Flower et al., 1997; Liu et al., 2020; Pegler, 1986; Reid & Eicker, 1998; Wang et al., 2018; Yang et al., 2024). So far, three species of Hymenagaricus (Heinemann & Little Flower, 1984) and fourteen species of Xanthagaricus (Heinemann & Little Flower, 1984; Little Flower et al., 1997) are described from the Kerala state of India. All the reports of taxa are based exclusively on morphological characters and further changes should be expected after the incorporation of molecular data.

During the exploration of macrofungi from 2017 to 2023 in the different locations of Matheran Hills, Maharashtra, India, amidst the monsoon seasons, we came across the interesting collections of Hymenagaricus and Xanthagaricus. After detailed morphological and molecular analyses based on nrITS and nrLSU, these collections represent two new species in the above genera.

2. Materials and Methods

2.1 Sampling and morphological observations

Basidiomata were obtained after photographed fresh in the habitat using Canon EOS 700D Camera (Canon Inc., Tokyo), and macroscopic characters were recorded from fresh specimens. Colour terminology for fresh mushrooms were followed from the procedure of Kornerup and Wanscher (1978). The examined mushrooms were dried in an electric dryer for approximately 10-12 h at 40-45 °C temperature (Hu et al., 2022). The holotypes were deposited in the Ajrekar Mycological Herbarium (AMH), Pune, India, while the paratypes were maintained in the Botany department of Smt. Chandibai Himathmal Mansukhani College, Thane, India. The micromorphological characters were accomplished from thin hand-cut sections of dried samples, then mounted in 5% (w/v) KOH, stained with 1% (w/v) phloxin and 0.5% (w/v) Congo red in distilled water. Melzer’s reagent was used to test the amyloidity of basidiospores. The notation [50/3/3] indicates that the 50 basidiospores were measured from 3 basidiocarps of 3 collections. Sizes of basidia, cheilocystidia and pileal elements were measured from at least 20 elements of each character. The following abbreviations were given for dimensions of basidiospores: Xm for arithmetic mean of length by width of basidiospores (± standard deviation), Q for quotient of length divided by width of individual basidiospores and Qm stands for the mean of Q values (± standard deviation). The abbreviation “H.” is used for Hymenagaricus, and “X.” for Xanthagaricus.

2.2 Molecular studies

The CTAB (Doyle & Doyle, 1987) method was used to extract the total genomic DNA. Moreover, based on the results of previous studies, the DNA markers nrITS and nrLSU were opted for the molecular phylogenetic analyses (Al-Kharousi et al., 2022; Hosen et al., 2017, 2018; Hussain et al., 2018). For the selected markers, the PCR amplification and purification was done at Genematrix LLP (Pune, India). The nrITS was amplified using ITS1/ITS4 primers (White et al., 1990), while the nrLSU region was amplified using LROR/LR5 primers (Moncalvo et al., 2000; Vilgalys & Hester, 1990). After the markers were amplified successfully, the purified PCR products were dispatched to Apical Scientific Sdn Bhd (Seri Kembangan, Selangor, Malaysia) for Sanger sequencing. The obtained sequences were quality-checked using Chromas (Technelisium Pvt. Ltd, Australia) software, and then further curated using BioEdit v 7.2.5 (Hall, 1999). Consensus sequences were accomplished using both forward and reverse sequences, and subsequently submitted to GenBank (Table 1). In accordance with previous research, the ingroups and outgroups (Chlorophyllum molybdites (G. Mey.) Massee and C. rachodes (Vittad.) Vellinga as outgroups) were recovered from NCBI database to construct the phylogenetic trees (Al-Kharousi et al., 2022; Crous et al., 2023; Fatima & Khalid, 2023; Haqnawaz et al., 2023; Hosen et al., 2017, 2018; Hussain et al., 2018; Kumla et al., 2018, 2021, 2023; Liu et al., 2020; Syed et al., 2023; Vellinga et al., 2011; Wang et al., 2018; Yang et al., 2024). The newly produced sequences were aligned separately along with NCBI data using MAFFT v 7.0 with default settings (Katoh et al., 2019). At the outset, the nrITS and nrLSU trees were constructed individually so as to verify their topology. The topology of both the trees was precisely the same. Furthermore, to build the combined tree, both markers were perused for their combining efficacy by performing Partition Homogeneity Test (ILD) in PAUP v-4.0b10 (Swofford & Sullivan, 2009). Pertained to ILD test, the matrix of both markers was concatenated using TaxonDNA v-1.7.8 (Vaidya et al., 2010). The combined dataset consists of 145 nrITS and 85 nrLSU sequences (including eight newly generated sequences during present study). The phylogenetic trees were constructed using Maximum Likelihood (ML) and Bayesian inference (BI) criteria. For ML analysis, IQTree v1.6.8 (Nguyen et al., 2014) was used, and the best fit evolutionary model (TIM3+F+I+G4) was chosen according to BIC by ModelFinder (an inbuilt tool of IQTree, Kalyaanamoorthy et al., 2017). Bayesian analysis was executed using Metropolis Coupled MCMC method in MrBayes v-3.2.6 (Ronquist et al., 2012). Two parallel chains were run for four million generations, the standard deviation of split frequency was obtained less than 0.01, and the effective sample size (ESS) for each parameter was ensured exceeding 200. The nucleotide substitution model (GTR+I+G) was selected using jModeltest (Darriba et al., 2012). Moreover, FigTree v-1.4.2 displayed the consensus trees (Rambaut, 2014). The phylogram's statistical supports were calculated using posterior probabilities (PP) and bootstrap values (BS). The sequence alignments and phylogenetic trees were submitted to TreeBASE (accession URL: http://purl.org/phylo/treebase/phylows/study/TB2:S31602?x-access-code=3e881310d5998a542e04a42b76e40df0&format=html).

Table 1. Fungal taxa, voucher specimen numbers, localities and GenBank accession numbers for nrITS and nrLSU sequences used for the present phylogenetic analyses. “-” means information not available from GenBank database. Sequences newly generated in the present study were shown in bold.

TaxonVoucher specimen number/strainLocalityGenBank accession numbersReferences
nrITSnrLSU
Agaricus aff. campestrisD. Murphy 6242USAHM488744-Vellinga et al., 2011
Agaricus bingensisC3155TogoKJ540950-Chen et al., 2015
Agaricus bingensisADK1992BeninKJ540954-Chen et al., 2015
Agaricus bingensisC3181TogoKJ540949-Chen et al., 2015
Agaricus bisporatusContu1ThailandAF432882-Challen et al., 2003
Agaricus deserticolaM. SmithUSAHM488747-Vellinga et al., 2011
Agaricus deserticolaSAT99-233-15USAHM488748-Vellinga et al., 2011
Agaricus diminutivusecv2360USAAF482831AF482877Vellinga et al., 2003
Agaricus inapertusecv2339USAAF482834-Vellinga et al., 2003
Agaricus megacystidiatusMFLU-2012-0996ThailandKF305947-Karunarathna et al., 2014
Agaricus megacystidiatusMFLU-2012-1004ThailandKF305946-Karunarathna et al., 2014
Agaricus rotalisecv3768USAHM488746-Vellinga et al., 2011
Agaricus sp.ecv3870ThailandHM488743HM488767Vellinga et al., 2011
Agaricus sp.N.L. Bougher H6271AustraliaAF482833-Vellinga et al., 2003
Agaricus sp.ecv3244USAHM488741-Vellinga et al., 2011
Agaricus sp.ecv3614ThailandHM488742-Vellinga et al., 2011
Agaricus sp.PC Bethke 6253USAHM488745-Vellinga et al., 2011
Agaricus subsaharianusZ1TanzaniaKM360157-Tibuhwa & Mwanga, 2014
Agaricus subsaharianusADK4732TanzaniaJF440300-Hama et al., 2010
Agaricus subsaharianusADK4733TanzaniaJF440301-Hama et al., 2010
Agaricus trisulphuratusLAPAF7ChinaKM657924-Zhou et al., 2016
Agaricus trisulphuratusecv3868ThailandHM488749-Vellinga et al., 2011
Barcheria willisiana MEL2177563AustraliaJF495036AY372216Lebel & Syme, 2012
Chlorophyllum molybditesAEF 1097USAAF482836-Vellinga et al., 2003
Chlorophyllum rachodesecv2106NetherlandsAF482849AY081247Vellinga et al., 2003
Clarkeinda trachodesecv3550ThailandHM488751-Vellinga et al., 2011
Clarkeinda trachodesecv3838ThailandHM488750HM488771Vellinga et al., 2011
Coniolepiota aff. spongodesecv3613ThailandHM488757-Vellinga et al., 2011
Coniolepiota spongodesecv3816ThailandHM488754-Vellinga et al., 2011
Coniolepiota spongodesecv3898ThailandHM488755-Vellinga et al., 2011
Coniolepiota spongodesPNG012ThailandHM488756HM488774Vellinga et al., 2011
Eriocybe chioneaecv3560ThailandHM488752HM488773Vellinga et al., 2011
Eriocybe chioneaecv3616ThailandHM488753HM488772Vellinga et al., 2011
Hymenagaricus ardosiicolorZ4TanzaniaKM360160-Tibuhwa & Mwanga, 2014
Hymenagaricus ardosiicolorLAPAF9TogoJF727840-Zhao et al., 2011
Hymenagaricus brunneodiscusLAH37955PakistanOR510863OR510865Crous et al., 2023
Hymenagaricus brunneodiscusLAH37956PakistanOR510862OR510864Crous et al., 2023
Hymenagaricus cf. kivuensisBR6089BurundiKM982454-GenBank
Hymenagaricus indicusAMH 10699TIndiaPP217302-In this study
Hymenagaricus indicusMMH 1511IndiaPP229193PP217303In this study
Hymenagaricus pakistanicusFAK195PakistanOP082404-Syed et al., 2023
Hymenagaricus pakistanicusFAK196PakistanOP082405-Syed et al., 2023
Hymenagaricus pakistanicusFAK197PakistanOP082406-Syed et al., 2023
Hymenagaricus parvulusJRZ-22-004OmanOR612994OR613017Hussain et al., 2024
Hymenagaricus parvulusJRZ2-22-002OmanOR612995-Hussain et al., 2024
Hymenagaricus saisamornaeSDBR-CMUNK0369TThailandMW345912MW345917Kumla et al., 2021
Hymenagaricus saisamornaeSDBR-CMUNKNW0474ThailandMW349605MW349603Kumla et al., 2021
Hymenagaricus saisamornaeSDBR-CMUNK0562ThailandMW349602MW349604Kumla et al., 2021
Hymenagaricus saisamornaeCA801ThailandJF727859-Zhao et al., 2011
Hymenagaricus saisamornaeMFLU 12-1011ThailandKM982451KM982453GenBank
Hymenagaricus siamensisSDBR-CMUNK1508TThailandOP836301OP836385Kumla et al., 2023
Hymenagaricus siamensisSDBR-CMUWP038ThailandOP837533OP836600Kumla et al., 2023
Hymenagaricus sp.CA833ThailandJF727858-Zhao et al., 2011
Hymenagaricus splendidissimusZRL3043ThailandJF691559-Zhao et al., 2011
Hymenagaricus splendidissimusecv3586ThailandHM488760HM488769Vellinga et al., 2011
Hymenagaricus splendidissimusGDGM46633ChinaMF621038MF621039Hosen et al., 2017
Hymenagaricus splendidissimusHTBM1385ChinaPP736734PP732964Yang et al., 2024
Hymenagaricus splendidissimus HTBM1925ChinaPP736665PP732895Yang et al., 2024
Hymenagaricus splendidissimusHTBM1940ChinaPP736670PP732900Yang et al., 2024
Hymenagaricus wadijarzeezicusJP27IndiaOR827569-GenBank
Hymenagaricus wadijarzeezicusJHN-22-019OmanOR612998OR613021Hussain et al., 2024
Hymenagaricus wadijarzeezicusNHZ-22-019OmanOR612997OR613020Hussain et al., 2024
Hymenagaricus wadijarzeezicusJRZ2-22-015OmanOR613000OR613018Hussain et al., 2024
Hymenagaricus wadijarzeezicusJRZ-22-005OmanOR612996OR613022Hussain et al., 2024
Pseudolepiota zangmuiMFLU100515ThailandKX904355-GenBank
Pseudolepiota zangmuiZ.W. Ge 2106ChinaKY768927-Ge & Yang, 2017
Xanthagaricus appendiculatusSQU-GOB003OmanOM185532-Al-Kharousi et al., 2022
Xanthagaricus boluoshanensis HKAS133457 (HT)ChinaPP736737PP732967Yang et al., 2024
Xanthagaricus boluoshanensisHTBM0428ChinaPP736739PP732969Yang et al., 2024
Xanthagaricus caeruleusGDGM 50651ChinaMF039088MF039086Hosen et al., 2018
Xanthagaricus caeruleusGDGM 50794ChinaMF039089MF039087Hosen et al., 2018
Xanthagaricus chamaeleontinusHKAS133454 (HT)ChinaPP736691PP732921Yang et al., 2024
Xanthagaricus chamaeleontinus HTBM0824ChinaPP736701PP732931Yang et al., 2024
Xanthagaricus chamaeleontinus HTBM1278ChinaPP736713PP732943Yang et al., 2024
Xanthagaricus chamaeleontinus HTBM1537ChinaPP736647PP732878Yang et al., 2024
Xanthagaricus chamaeleontinusHTBM1585ChinaPP736740PP732970Yang et al., 2024
Xanthagaricus epipastusHMJAU 45195ChinaMH166766-Wang et al., 2018
Xanthagaricus epipastusHMJAU 45196ChinaMH166765-Wang et al., 2018
Xanthagaricus epipastuszrl 3045ThailandHM436649HM436609Zhao et al., 2010
Xanthagaricus erinaceus HTBM0936ChinaPP736704PP732934Yang et al., 2024
Xanthagaricus erinaceus HTBM0940ChinaPP736706PP732936Yang et al., 2024
Xanthagaricus erinaceus HTBM0941ChinaPP736707PP732937Yang et al., 2024
Xanthagaricus erinaceus HTBM1312ChinaPP736718PP732948Yang et al., 2024
Xanthagaricus flavosquamosusGDGM 50918ChinaMF351629MF351631Hosen et al., 2017
Xanthagaricus flavosquamosusGDGM 50924ChinaMF351628-Hosen et al., 2017
Xanthagaricus flavosquamosusGDGM 50913ChinaMF351627-Hosen et al., 2017
Xanthagaricus guangzhouensis HKAS133455 (HT)ChinaPP736697PP732927Yang et al., 2024
Xanthagaricus guangzhouensis HTBM0632ChinaPP736657PP732888Yang et al., 2024
Xanthagaricus heinemannii HKAS133458 (HT)ChinaPP736714PP732944Yang et al., 2024
Xanthagaricus heinemannii HTBM0943ChinaPP736708PP732938Yang et al., 2024
Xanthagaricus heinemannii HTBM1722ChinaPP736757PP732987Yang et al., 2024
Xanthagaricus ianthinusHMJAU 45191ChinaMH166762-Wang et al., 2018
Xanthagaricus ianthinusHMJAU 45192ChinaMH166761-Wang et al., 2018
Xanthagaricus ianthinusHMJAU 45193ChinaMH166760-Wang et al., 2018
Xanthagaricus ianthinusHMJAU 45194ChinaMH166764-Wang et al., 2018
Xanthagaricus ianthinus HTBM1651ChinaPP736743PP732973Yang et al., 2024
Xanthagaricus ianthinus HTBM1970ChinaPP736692PP732922Yang et al., 2024
Xanthagaricus kotadduensisLAH 37122TPakistanON372610ON372605Haqnawaz et al., 2023
Xanthagaricus kotadduensisLAH 37123PakistanON372611ON372604Haqnawaz et al., 2023
Xanthagaricus minimus HKAS133465 (HT)ChinaPP736744PP732974Yang et al., 2024
Xanthagaricus minimus HTBM1679ChinaPP736749PP732979Yang et al., 2024
Xanthagaricus montgomeryensisLAH37434PakistanOP150139OP150142Fatima & Khalid, 2023
Xanthagaricus montgomeryensisLAH 37435PakistanOP150140OP150143Fatima & Khalid, 2023
Xanthagaricus necopinatusHNL502083LaosMW040548-GenBank
Xanthagaricus necopinatusMFLU 19-2358ThailandMN480544-Sysouphanthong et al., 2021
Xanthagaricus necopinatusMFLU 19-2359ThailandMN480545-Sysouphanthong et al., 2021
Xanthagaricus necopinatus HTBM1946ChinaPP736686PP732916Yang et al., 2024
Xanthagaricus necopinatus HTBM1947ChinaPP736687PP732917Yang et al., 2024
Xanthagaricus nigrosquamosusAMH 10700TIndiaMK447559-In this study
Xanthagaricus nigrosquamosusMMH 1411IndiaPP263034PP217230In this study
Xanthagaricus nigrosquamosusMMH 11412IndiaPP217227PP217231In this study
Xanthagaricus omanicusSQUH-GOB006AOmanOM185531-Al-Kharousi et al., 2022
Xanthagaricus omanicusSQUH-GOB008BOmanOM185530-Al-Kharousi et al., 2022
Xanthagaricus pakistanicusHUP SH 315PakistanKY621556-Hussain et al., 2018
Xanthagaricus pakistanicusLAH SH 207PakistanNR164559NG060017Hussain et al., 2018
Xanthagaricus pakistanicusSWAT SH 389PakistanKY621557-Hussain et al., 2018
Xanthagaricus phylononcaeruleus HKAS133456 (HT)ChinaPP736698PP732928Yang et al., 2024
Xanthagaricus phylononcaeruleus HTBM0960ChinaPP736710PP732940Yang et al., 2024
Xanthagaricus phylononcaeruleus HTBM1299ChinaPP736715PP732945Yang et al., 2024
Xanthagaricus phylononcaeruleus HTBM1304ChinaPP736717PP732947Yang et al., 2024
Xanthagaricus punjabensisLAH37124TPakistanON372612ON372606Haqnawaz et al., 2023
Xanthagaricus punjabensisLAH37125PakistanON372609ON372607Haqnawaz et al., 2023
Xanthagaricus purpureosquamulosusMFLU 19-2354ThailandMN099353MN097917Sysouphanthong et al., 2021
Xanthagaricus purpureosquamulosusMFLU 19-2356ThailandMN099354MN097918Sysouphanthong et al., 2021
Xanthagaricus purpureosquamulosus HTBM0427ChinaPP736738PP732968Yang et al., 2024
Xanthagaricus purpureosquamulosus HTBM1666ChinaPP736648PP732879Yang et al., 2024
Xanthagaricus retisporus HKAS133450 (HT)ChinaPP736660PP732891Yang et al., 2024
Xanthagaricus retisporus HKAS133449PP736655PP732886Yang et al., 2024
Xanthagaricus retisporus HTBM0687ChinaPP736699PP732929Yang et al., 2024
Xanthagaricus retisporus HTBM0937ChinaPP736641PP732872Yang et al., 2024
Xanthagaricus scauinus HKAS133463 (HT)ChinaPP736732PP732962Yang et al., 2024
Xanthagaricus scauinus HTBM0714ChinaPP736700PP732930Yang et al., 2024
Xanthagaricus scauinus HTBM0916ChinaPP736736PP732966Yang et al., 2024
Xanthagaricus scauinus HTBM0935ChinaPP736703PP732933Yang et al., 2024
Xanthagaricus siamensisMFLU 19-0574ThailandMN176992MN176982Liu et al., 2020
Xanthagaricus siamensisMFLU 19-0575ThailandMN176991MN176981Liu et al., 2020
Xanthagaricus siamensisMFLU 19-0576ThailandMN176993MN176983Liu et al., 2020
Xanthagaricus sp.LAH10492016PakistanMH778555-GenBank
Xanthagaricus sp.9518ChinaMN088737-GenBank
Xanthagaricus sp.9519ChinaMN088738-GenBank
Xanthagaricus sp.TL6025MalaysiaAF482835AF482879Vellinga et al., 2003
Xanthagaricus sp.ecv3807ThailandHM488761HM488770Vellinga et al., 2011
Xanthagaricus taiwanensis C.M. Chen 3636 TaiwanTaiwanDQ006271DQ006270Ge et al., 2008
Xanthagaricus taiwanensisHKAS 42545 TaiwanTaiwanDQ490633DQ457680Matheny et al., 2006
Xanthagaricus thailandensisSDBR-CMUJK010ThailandMG256663MG256665Kumla et al., 2018
Xanthagaricus thailandensisSDBR-CMUNK0115ThailandMG256664MG256666Kumla et al., 2018

3. Taxonomy

Hymenagaricus indicus P.B. Patil, S.A. Vaidya, N.P. Patil & S.K. Maurya, sp. nov. Figs. 1, 2.

MycoBank no.: MB 853990.

Fig. 1. - Hymenagaricus indicus (AMH 10699, holotype). A-D: Basidiomata in the natural habitat. E: Basidiomata with scale bar. F: Lamellae. Bars: A-D 1 cm.
Fig. 2. - Hymenagaricus indicus (AMH 10699, holotype). A: Basidiospores. B: Scanning electron photographs of basidiospores. C, D: Basidia. E-G: Cheilocystidia. H: Pileipellis. Bars: A, B 5 μm; C-H 10 μm.

Diagnosis: Differs from H. pakistanicus by its small basidiomata (up to 15 mm), and ellipsoid to ovoid-ellipsoid, smaller basidiospores and, differs from H. parvulus by its plate-like brown squamules, narrower and longer stipe and smaller basidiospores.

Type: INDIA, Maharashtra, Raigad District, Matheran Hills (18°58'48.00"N, 73°16'12.00"E, 800 m a.s.l.), 20 Aug 2022, P. B. Patil. (AMH 10699, Holotype).

DNA sequence ex-Holotype: PP217302 (nrITS).

Etymology: The species epithet “indicus” refers to the name of the country ‘India’ where the holotype was collected.

Basidiomata small. Pileus 5-15 mm diam, initially hemispherical to conico-campanulate, then convex to nearly applanate with age, dry, white (8A1) to pinkish white (8A2), central disk covered with smooth, plate-like, snuff brown (5F6), violet brown (10E7-8) to brown (6E8) squamules; small, numerous, squamules scattered towards margin, margin incurved, white (8A1) to pinkish white (8A2), striate, with appendiculate thin velar remnants; Lamellae free, depressed around the stipe, pinkish white (8A2) in juvenile, becoming greyish brown (11E3) to violet brown (11E5-6) at maturity, with entire edge, broadly ventricose, distant, lamellulae of 3-4 different lengths. Stipe 30-50 mm × 1-2 mm, central, cylindrical, fistulose, mostly curved, slightly attenuated towards base, white (8A1) to greyish brown (11E3), often covered with white, minute squamules. Annulus very thin, apical, concolorous with the pileus margin, mostly lost with age or due to handling.

Basidiospores [50/3/3] 4-5.5(-6) × 2.5-3.5(-3.7) µm, Q = 1.35-1.88, [Xm = 4.5 ± 0.4 × 3.0 ± 0.3 µm, Qm = 1.52 ± 0.13], ellipsoid to ovoid-ellipsoid, smooth under light microscope and SEM, inamyloid, no germ pore, thick-walled (0.8 µm), guttulate, apiculate, yellowish brown to dark brown when observed in H2O and 5% KOH. Basidia 15-20 × 5-7 µm, clavate, thin walled, hyaline, 2-4 spored, sterigmata up to 3.5 µm long. Lamellar trama regular to subregular, consist of thin-walled, cylindrical hyphae, 3-7 µm broad. Cheilocystidia 13.5-28 × 7.5-12 µm, numerous, clavate to broadly clavate, sometimes obovate to slightly fusoid, hyaline, thin-walled. Pleurocystidia absent. Pileipellis (pileal squamules) an epithelium, composed of globose to subglobose, thin-walled, hyaline cells measuring 6.5-20.5 × 7.5-18 µm. Stipitipellis consisting of parallel, hyaline hyphae, 7-11.5 µm wide. Stipe squamules intricate trichoid, composed of globose to subglobose, cylindrical to clavate cells measured 4-16 × 2.5-4.5 µm. Clamp connections absent in all observed tissues.

Habitat and distribution: Scattered to clustered on the soil, in semi-evergreen forest dominated by tree species like Memecylon umbellatum Burm.F., Garcinia talbotii Raizada ex Santapau., Olea dioica Roxb., Xantolis tomentosa (Roxb). Raf. So far known only from Matheran Hills, Maharashtra, India.

Additional specimens examined: INDIA, Maharashtra, Raigad District, Matheran Hills (18°58'48.00"N, 73°16'12.00"E), 22 Jul 2023 (MMH 1511, PP229193 for nrITS and PP217303 for nrLSU), 13 Aug 2023 (MMH 1512), Prashant B. Patil.

Xanthagaricus nigrosquamosus P.B. Patil, S.A. Vaidya, N.P. Patil & S.K. Maurya, sp. nov. Figs. 3, 4.

MycoBank no.: MB 853994.

Fig. 3. - Xanthagaricus nigrosquamosus (AMH 10700, holotype). A-D: Basidiomata in the natural habitat. E: Pileal surface. F: Lamellae with scale bar. Bars: A-E 1 cm.
Fig. 4. - Xanthagaricus nigrosquamosus (AMH 10700, holotype). A: Basidiospores. B: Scanning electron photographs of basidiospores. C, D: Basidia. E-H: Cheilocystidia. I: Pileipellis. Bars: A 5 μm; B 2 μm; C-I 10 μm.

Diagnosis: Differing from X. punjabensis and X. retisporus by its black squamules on pileus surface and smaller basidiospores.

Type: INDIA, Maharashtra, Raigad District, Matheran Hills (18°58'48.00"N, 73°16'12.00"E, 800 m a.s.l.), 12 Aug 2018, P. B. Patil. (AMH 10700, Holotype).

DNA sequence ex-Holotype: MK447559 (nrITS).

Etymology: The species epithet “nigrosquamosus” refers to the black squamules on the pileus surface.

Basidiomata small-sized. Pileus 10-30 mm diam, obtusely conical or convex when young, then broadly umbonate to plane with age, dry, light yellow (4A4-5), vivid yellow (2A8) to maize yellow (4A6), surface concentrically covered with greenish black (27H8) to tar black (H1) squamules, one or more large, darker squamules at the umbonate centre, scattered elsewhere; margin incurved, with prominent light yellow (4A4-5), appendiculate, triangular velar remnants; context up to 1 mm thick at centre, no change in colour upon cut. Lamellae free, depressed around the centre, pinkish white (10A2) in juvenile, becoming pale brown (5D4) to reddish brown (9D5) at maturity, with crenulate edge, broadly ventricose, moderately crowded, lamellulae of 4-5 different lengths. Stipe 20-30 mm × 1-2 mm, central, cylindrical, fistulose, often curved, equal, yellowish white (4A2), light brown (4A4) to pale brown (5D4), often covered with yellow (4A6), minute squamules. Annulus not prominent, thin, apical, concolorous with the pileus margin, mostly lost with age or due to handling.

Basidiospores [50/3/3] (3-)3.5-4.5(-4.7) × (2.2-)2.4-3 µm, Q = (1.2-)1.35-1.7(-1.9), [Xm = 4 ± 0.32 × 2.6 ± 0.22 µm, Qm = 1.54 ± 0.12], broadly ellipsoid to ellipsoid to ovoid-ellipsoid, smooth under light microscope but rugulose-rough under SEM, no germ pore, slightly thick-walled (0.5 µm), guttulate, inamyloid, apiculate, yellowish brown when observed in H2O and 5% KOH. Basidia 10-14 × 4-6 µm, clavate, thin walled, hyaline, 2-4 spored, sterigmata up to 2 µm long. Lamellar trama regular to subregular, consisting of thin-walled, cylindrical hyphae, 4-7 µm broad, Cheilocystidia 16-30 × 6-12 µm, numerous, clavate to broadly clavate, sometimes broadly fusoid, hyaline, thin-walled. Pleurocystidia absent. Pileipellis an epithelium, composed of globose to subglobose cells, terminal cells 7.5-21 × 6.5-12.5 µm. Stipitipellis consisting of parallel hyphae, 5.5-13 µm wide. Stipe squamules intricate trichoid, composed of cylindrical to clavate cells measured 4.5-14 × 2.5-4 µm. Clamp connections absent in all observed tissues.

Habitat and distribution: Scattered to clustered, usually strongly caespitose on the soil, in semi-evergreen forest dominated by tree species like Memecylon umbellatum Burm.F., Garcinia talbotii Raizada ex Santapau., Olea dioica Roxb., Xantolis tomentosa (Roxb). Raf. So far known only from Matheran Hills, Maharashtra, India.

Additional specimens (paratypes) examined: INDIA, Maharashtra, Raigad District, Matheran Hills (18°58'48.00"N, 73°16'12.00"E), 11 Aug 2019 (MMH 1411, PP263034 for nrITS and PP217230 for nrLSU), 13 Aug 2023 (MMH 1412, PP217227 for nrITS and PP217231 for nrLSU), Prashant B. Patil.

4. Discussion

Hymenagaricus indicus is delineated by its small-sized basidiomata, squamulose pileus made up of pseudoparenchymatous tissues composed of globose to subglobose elements, ellipsoid to ovoid-ellipsoid, smooth, thick walled, yellowish brown basidiospores measuring 4-5.5 × 2.5-3.5 µm. The characters like globose to subglobose cells of pileal squamules are common with H. nigroviolaceus Heinem., H. pakistanicus M.F. Syed & M. Saba, H. siamensis J. Kumla, W. Phonrob, N. Suwannar & S. Lumyong. However, H. nigroviolaceus has smaller size of the pseudoparenchymatous cells (4-12 µm wide) and larger basidiospores (5.4-7.4 × 3.5-4.5 µm) (Heinemann, 1985). Hymenagaricus pakistanicus also has a striate margin but markedly differs from H. indicus by its smaller pileal squamulose cells (5.2-10.4 × 2-4 µm) and subglobose to broadly ellipsoid, larger basidiospores (4.9-6.2 × 3.3-4.9 µm) (Syed et al., 2023). Furthermore, H. siamensis differs from all above species by having remarkably largest basidiospores in the genus (6.5-8 × 4-5 µm) (Kumla et al., 2023). Morphologically, H. saisamornae J. Kumla & N. Suwannarach is also close to H. indicus by having white to pinkish white pileus, covered with violet brown plate-like squamules but distinguishable from H. indicus by its larger basidiospores (5.5-7 × 4-4.5 µm) and hymeniform pileal squamules cells (Kumla et al., 2021). Another recently described species from Pakistan, H. brunneodiscus M. Asif, Saba & M. Raza differs from H. indicus by its larger pileus size (28-43 mm diam) and larger basidiospores (5.1-6.2 × 3.3-3.9 µm) (Crous et al., 2023). Phylogenetically, H. parvulus Al‐Kharousi, Al‐Sadi, Al-Yahya’ei, & S. Hussain formed sister clade with H. indicus but differs by having pinkish to creamy, appressed pellicle squamules on pileus, shorter and broader stipe (25-35 × 2-5 mm), and larger basidiospores (5.0-6.5 × 4.0-4.5 µm) (Hussain et al., 2024). Comparison of morphological characters of H. indicus with Indian taxa of Hymenagaricus are depicted in Table 2.

Table 2. Comparison of Hymenagaricus indicus and Xanthagaricus nigrosquamosus with the other reported species of the genera Hymenagaricus and Xanthagaricus from India.

TaxaPileus size, shape and colour Cells of squamulose pileus/ sizeBasidium size (µm)Cheilocystidia size (µm)Basidiospores morphology
H. alphitochrousa,c20-35 mm diam, convex to plane, pale vinaceous pinkHymeniform cells/ 17-27 × 10-16 µm.16-20 × 6.5-815-36 × 5-105.4-6.4 × 3.9-4.5 µm, Q = 1.39, ellipsoid, yellowish brown
H. canorubera15-25 mm diam, convex to plane, purple to wine grayHymeniform cells/ 18-28 × 9-16 µm.13-15 × 6.5-721-35 × 7-124.6-5.7 × 3.5-4.3 µm, Q = 1.27, subcymbiform, dark brown
H. cylindrocystisa20-30 mm diam, convex to plane, grayish brownHymeniform and pseudoparenchymatous cells/ 9-12 µm in diameter17-22 × 7-8.535-68 × 5.76.4-8.4 × 4.5-5.6 µm, Q = 1.5, ellipsoid, dark brown
H. indicusd5-15 mm diam, conico-campanulate then convex to plane, white to pinkish whitePseudoparenchymatous, globose to subglobose elements/ 6.5-20.5 × 7.5-18 µm. 15-20 × 5-713.5-28 × 7.5-124-5.5 × 2.5-3.5 µm, Q = 1.52, ellipsoid to ovoid-ellipsoid, yellowish brown to dark brown
X. brunneolusb4.8 mm diam, convex to plane, dark brown3.5-4 × 2.5-3 µm, oval to broadly ellipsoid, brown
X. calicutensisa42 mm diam, convex to plane, olive brownHymeniform or pseudoparenchymatous/ 9-12 µm in diameter14-18 × 6-7.214-24 × 8-184.9-5.8 × 3.7-4.3 µm, Q = 1.34, cymbiform, brownish yellow
X. chrysosporusa18-31 mm diam, convex to plane with subumbonate disc, pale orangePseudoparenchymatous/ 11-14 µm in diameter14-16.5 × 6.5-7.516.5-25 × 5-7.56-7.4 × 3.8-4.8 µm, Q = 1.52, ellipsoid, rough-warty under SEM, golden yellow
X. erinaceusa15-20 mm diam, conico-convex, chestnut brownHymeniform, clavate to pear shaped elements/ 10-24 × 6-10 µm.11-14 × 4.7-5.515-20 × 4-6.54.3-5.1 × 2.7-3.2 µm, Q = 1.62, rounded warty (0.1 to 0.3 µm diam.) under SEM, ellipsoid, yellow
X. flavidorufusa20-27 mm diam, convex with umbonate disc, brownVesicular elements, collapsed/ 10-15 µm in diameterNRCollapsed, 10 in diameter4.4-5.6 × 3-3.6 µm, Q = 1.51, pale yellow, ellipsoid
X. globisporusa 10 mm diam, conico-convex with subumbonate disc, greenish yellowHymeniform or pseudoparenchymatous/ 10-25 × 8-25 µm.14.5-16.5 × 6-7.512-23 × 4-104.6-5.1 × 4.1-4.9 µm, Q = 1.09, subglobose, yellowish, surface reticulate under SEM, thick walled
X. gracilisa5-10 mm diam, convex with subumbonate disc, yellowPseudoparenchymatous/ 10-25 × 8-25 µm.13.5-16.5 × 6-7.518-24 × 6-124.8-6.3 × 3.5-4.2, Q = 1.45, ellipsoid, finely verrucose under SEM, deep yellow
X. luteolosporusa30-40 mm diam, convex to plane, yellowish brownHymeniform, subglobose to pyriform elements/ 7-30 µm in diameter12.5-16 × 5-614.5-21 × 8-115-6 × 3.3-4.2 µm, Q = 1.43, ellipsoid with slightly truncated at the apex, brownish yellow
X. myriostictusa4-6 mm diam, convex with subumbonate disc, ochre brownHymeniform or pseudoparenchymatous, globose elements/ 9-20 µm in diameter11-13 × 4.5-513-18 × 3.5-53.6-4.4 × 2.6-3 µm, Q = 1.43, ellipsoid, irregularly warted under SEM, pale yellow
X. nanusb4-5 mm diam, convex, yellowish orange4.5-5 × 4.5 µm, globose to subglobose, brown
X. rubescensa10-20 mm diam, conico-convex, smoky brownPseudoparenchymatous, globose to ellipsoid elements/ 15-35 × 8-12 µm.13.5-16.5 × 615-25 × 4-84.1-4.9 × 2.9-3.5 µm, Q = 1.39, ellipsoid, yellowish, reticulate under SEM
X. subaeruginosusa,c25-45 mm diam, obtusely umbonate, yellowish brownHymeniform or pseudoparenchymatous/ 12-16 µm in diameterNR15-20 × 7-94-5 × 2.8-3.5 µm, Q = 1.46, cymbiform, yellow brown
X. subepipastusa10-15 mm diam, convex with subumbonate disc, emeraldPseudoparenchymatous, globose to vesicular elements/ 11-20 µm in diameter14.5-16.5 × 6.5-7.515-23.5 × 6-124.8-5.3 × 3.3-3.9 µm, Q = 1.40, ellipsoid, thick wall, reticulate under SEM, pale yellow
X. viridulusa5-15 mm diam, conico-campanulate to convex then plane, yellowish brownPseudoparenchymatous or hymeniform, vesicular elements/ 14-40 × 10-35 µm in diameter13-16 × 5-6.513-26 × 5-83.8-5 × 2.9-3.6 µm, Q = 1.35, cymbiform, pale yellowish brown
X. nigrosquamosusd10-30 mm diam, convex then broadly umbonate to plane, light yellow to vivid yellow to maize yellowPseudoparenchymatous, globose to subglobose elements/ 7.5-21 × 6.5-12.5 µm. 10-14 × 4-616-30 × 6-123.5-4.5 × 2.4-3 µm, Q = 1.54, broadly ellipsoid to ellipsoid to ovoid-ellipsoid, rugulose-rough under SEM, yellowish brown

aHeinemann & Little Flower (1984), bLittle Flower et al., (1997), cPegler (1986) and dIn this study. “NR” means not reported. Species obtained in this study were shown in bold. The abbreviation H is used for Hymenagaricus, and X for Xanthagaricus.

Xanthagaricus nigrosquamosus is characterised by its black pileal squamules, broadly ellipsoid to ovoid-ellipsoid basidiospores with a rugulose-rough surface under SEM, and a pseudoparenchymatous epithelial pileipellis consist of globose to subglobose elements. Based on the overall appearance of the basidiomata, Xanthagaricus nigrosquamosus is macromorphologically close to X. epipastus (Berk. & Broome) Hussain, X. flavosquamosus T.H. Li, Iqbal Hosen & Z.P. Song, X. montgomeryensis N. Fatima & Khalid, X. necopinatus Iqbal Hosen, T.H. Li & G.M. Gates, X. pakistanicus Hussain, Afshan & Ahmad, and X. taiwanensis (Zhu L. Yang, Z.W. Ge & C.M. Chen) Hussain. However, X. epipastus has a yellow to yellowish brown squamules on the pileus surface, and larger basidiospores (4.2-4.9 × 2.8-3.4 µm) (Heinemann & Little Flower, 1984). Xanthagaricus flavosquamosus is distinguishable from X. nigrosquamosus by its larger and wider basidiospores (5-5.5 × 3-3.5 µm) which are verrucose or warty under SEM and smaller cheilocystidia (7-15 × 6-9 µm) (Hosen et al., 2017). Xanthagaricus montgomeryensis has a pileus covered by dark brown squamules, slightly larger and narrower basidiospores with higher Q value (3.99-4.87 × 2.12-2.85 µm; Qm = 1.75) (Fatima & Khalid, 2023). Xanthagaricus necopinatus is also shared common characters with X. nigrosquamosus such as broadly ellipsoid to ovoid-ellipsoid basidiospores with a rugulose-rough surface under SEM and similar Q value but differs from X. nigrosquamosus by having yellow to yellowish brown squamules on the pileus surface, slightly larger basidiospores (4-5 × 2.7-3.2 µm), and smaller and narrower cheilocystidia (15-20 × 4-6 µm) (Hosen et al., 2017). Xanthagaricus pakistanicus differs from all above species by its globose to subglobose basidiospores (Hussain et al., 2018). Xathagaricus taiwanensis also has a black squamules on the pileus surface but markedly differs from X. nigrosquamosus in having larger basidia (15-22 × 7-8 µm), and larger basidiospores (5-5.5 × 3-4 µm) (Ge et al., 2008). Another species, X. punjabensis Haqnawaz, Niazi & Khalid, and X. retisporus Kun L. Yang, Jia Y. Lin & Zhu L. Yang are phylogenetically close to X. nigrosquamosus. However, X. punjabensis having globose to subglobose, larger basidiospores (5.1-5.9 × 4.1-5.5 µm) (Haqnawaz et al., 2023), and X. retisporus has pudding orange, cherrywood brown to coffee-bean brown pileal squamules, distinctly larger basidiospores (5-6 × 3-4 µm), and smaller cheilocystidia (11-13 × 8-9 µm) (Yang et al., 2024). Comparison of morphological characters of X. nigrosquamosus with Indian taxa of Xanthagaricus are depicted in Table 2.

The combined dataset alignment contained 1323 characters, which includes the aligned sequence dataset composed of 668 bp from nrITS, and 655 bp from nrLSU for the analyses. The exhaustive ILD test analysis with 1000 bootstrap showed congruence with the p value 0.85 at the significance level of 0.05. So, the dataset was combined for the further analysis. Based on combined analysis using ML and Bayesian methods we obtained similar tree topologies. In phylogenetic analyses of Hosen et al. (2017), the genus Hymenagaricus appears to be polyphyletic and the species of Hymenagaricus are intermixed with the monotypic genus, Heinemannomyces Watling and showed its close relationship with Heinemannomyces. (Hosen et al., 2017). So, the Heinemannomyces would be grouped into the single genus Hymenagaricus or separate them into sub-genus/section level as suggested by Hosen et al. (2017). However, morphologically, Heinemannomyces differs from Hymenagaricus by its medium-sized to large basidiomata, pileus surface covered with wooly arachnoid velar remnants, a reddening of context when cut, bluish gray to leaden gray lamellae, and hyphae forming an irregular trichoderm in pileal squamules (Watling, 1998). Further investigation of the taxa, Heinemannomyces, Hymenagaricus and Xanthagaricus on the basis of multi-gene (nrITS, nrLSU, rpb2, tef-1α) phylogenetic analyses and detailed morphological studies by Yang et al. (2024) confirmed that the generic status of Heinemannomyces was no longer exist and hence Heinemannomyces was considered as a synonym under Hymenagaricus. The morphological interrogation of Hymenagaricus and Xanthagaricus taxa by Yang et al. (2024) showed that epitheloid or hymeniform cells of pileus squamules may be terminated with intricate trichoid elements, and both genera have a wider range of basidiospore colours and, also insinuated that the size of cells in pileus squamules and the structure of stipe squamules are usually deceptive for identification of taxa. Further, Yang et al. (2024) propounded the importance of morphological features for the identification of Xanthagaricus species such as basidiomata strongly caespitose or not, basidiospore ornamentation, shape and size of cheilocystidia, and length of the stipe.

The newly described species H. indicus placed in a supported clade (100/1) together with H. pakistanicus, and H. parvulus which appeared sister to H. indicus with strong bootstrap and posterior probability supports (92/1) (Fig. 5). In phylogenetic tree, the genus Xanthagaricus recovers as a monophyletic clade and appeared sister to Pseudolepiota Z.W. Ge, a monotypic genus recently reported from China, with strong bootstrap and posterior probability supports (91/1). Moreover, this study revealed monophyletic origin of X. nigrosquamosus and nested in a supported group (96/1) with X. montgomeryensis, X. punjabensis, X. retisporus, X. taiwanensis, X. thailandensis, and undescribed taxa, with two sequences from China (ITS: GenBank MN088737, MN088738) and one from Pakistan (ITS: GenBank MH778555) (Fig. 5).

Fig. 5. - Maximum likelihood phylogram generated from the combined dataset of two nuclear genes (nrITS and nrLSU). Bootstrap values (BS) ≥ 70 and Bayesian posterior probability (PP) ≥ 0.7 are given at the internodes. Chlorophyllum molybdites and Chlorophyllum rachodes are selected as outgroups. The new species, Hymenagaricus indicus and Xanthagaricus nigrosquamosus, are highlighted in bold on the phylogram. Voucher specimen numbers are provided after the species name. The scale bar represents a phylogenetic distance of 0.04 nucleotide substitutions per site.

Disclosure

The authors declare no conflicts of interest.

Acknowledgements

We greatly acknowledge the Principal, Smt. C.H.M. College, Ulhasnagar, Maharashtra, India for providing the laboratory facilities.

References
 
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